主持科研项目:

(1) 国家自然科学基金委员会，面上项目，32270232，茄科系统重建和进化生物学分析揭示其花果发育进化机理，2023-01至2026-12，主持

(2) 国家自然科学基金委员会，面上项目，31970224，基于核基因的葫芦科系统关系重建和相关进化生物学研究，2020-01至2023-12，，主持

(3) 国家自然科学基金委员会，面上项目，31770242，建构高涵盖度的十字花科系统进化关系并分析花果发育及抗逆基因在不同支系中的进化路线，2018-01至2019-12，主持

(4) 国家自然科学基金委员会，面上项目，31670209，基于核基因的蔷薇科系统重建及相关进化生物学研究，2017-01至2020-12，主要参与

(5) 国家自然科学基金委员会，重大研究计划，91531301，十字花科植物近缘种环境适应性的系统发育基因组学和分子遗传学研究，2016-01至2018-12，主要参与

发表学术论文:

2022

Wang B, Luo Q, Li Y, Du K, Wu Z, Li T, Shen W-H, Huang C-H*, Gan J*, Dong A* 2022. Structural insights into partner selection for MYB and bHLH transcription factor complexes. Nature Plants https://doi: 10.1038/s41477-41022-01223-w. [SCI]

Chen L-Y, Lu B, Morales-Briones DF, Moody ML, Liu F, Hu G-W, Huang C-H*, Chen J-M*, Wang Q-F* 2022. Phylogenomic analyses of Alismatales shed light into adaptations to aquatic environments. Molecular Biology and Evolution 39: msac079. [SCI]

Liu B-B, Ren C, Kwak M, Hodel RGJ, Xu C, He J, Zhou W-B, Huang C-H, Ma H, Qian G-Z, Hong D-Y*, Wen J* 2022. Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere. Journal of Integrative Plant Biology 64: 1020-1043. [SCI]

Huang W, Zhang L, Columbus JT, Hu Y, Zhao Y, Tang L, Guo Z, Chen W, McKain M, Bartlett M, Huang C-H, Li D-Z, Ge S, Ma H*. 2022. A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis. Molecular Plant 15: 755-777. [SCI]

Zhang L, Zhu X, Zhao Y, Guo J, Zhang T, Huang W, Huang J, Hu Y, Huang C-H*, Ma H*. 2022. Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution. Molecular Biology and Evolution 39: msac026. [SCI]

2021

郭文钰, 黄建勋*. 影响开花植物物种多样化速率变化的因素探讨. 广西植物, 2021, 41(10): 1707-1718.

Morales-Briones DF*, Gehrke B, Huang C-H, Liston A, Ma H, Marx HE, Tank DC, Yang Y. 2021. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology 71: 190-207. [SCI]

Hu S-H, Lin S-F, Huang Y-C, Huang C-H, Kuo W-Y, Jinn T-L*. 2021. Significance of AtMTM1 and AtMTM2 for mitochondrial MnSOD activation in Arabidopsis. Frontiers in Plant Science 12: 690064. [SCI]

Zhao Y, Zhang R, Jiang K, Qi J, Hu Y, Guo J, Zhu R, Zhang T, Egan AN, Yi T-S, Huang CH*, Ma H*. 2021. Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae. Molecular Plant 14: 748-773. [SCI]

@@ 封面文章

Zhang C#, Huang CH#, Liu M, Hu Y, Panero JL, Luebert F, Gao T, Ma H*. 2021. Phylotranscriptomic insight into Asteraceae diversity, polyploidy, and morphological innovation. Journal of Integrative Plant Biology 63: 1273-1293. [SCI]

2020

Guo J, Xu W, Hu Y, Huang J, Zhao Y, Zhang L, Huang CH*, Ma H*. 2020. Phylotranscriptomics in Cucurbitaceae reveal multiple whole-genome duplications and key morphological and molecular innovations. Molecular Plant 13: 1117-1133. [SCI]

@@ 封面文章，并有专文介绍：

Barrera-Redondo J, Lira-Saade R, Eguiarte LE. 2020. Gourds and tendrils of Cucurbitaceae: how their shape diversity, molecular and morphological novelties evolved via whole-genome duplications. Molecular Plant 13: 1108-1110

Huang CH*, Qi X, Chen D, Qi J, Ma H*. 2020. Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns. Journal of Integrative Plant Biology 62: 433-455. [SCI]

Yang L, Su D, Chang X, Foster CSP, Sun L, Huang CH, Zhou X, Zeng L, Ma H, Zhong B*. 2020. Phylogenomic insights into deep phylogeny of angiosperms based on broad nuclear gene sampling. Plant Communications 1: 100027. [SCI]

Zhang C, Zhang T, Luebert F, Xiang Y, Huang CH, Hu Y, Rees M, Frohlich MW, Qi J*, Weigend M*, Ma H*. 2020. Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome duplications. Molecular Biology and Evolution 37: 3188-3210. [SCI]

2019

Li H, Huang CH, Ma H. 2019. Whole-genome duplications in pear and apple. In: Korban S. (eds). The Pear Genome. Compendium of Plant Genomes. Springer, Cham.

2018

Qi X, Kuo L-Y, Guo C, Li H, Li Z, Qi J, Wang L, Hu Y, Xiang J, Zhang C, Guo J, Huang CH* and Ma H*. 2018. A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families. Molecular Phylogenetics and Evolution 127: 961-977. [SCI]

2017

Xiang YZ#, Huang CH#, Yi H, Wen J, Li S, Yi T, Chen H, Xiang J*, and Hong M*. 2017. Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication. Molecular Biology and Evolution 34: 262-281. [SCI]

@@ 封面文章，并有专文介绍：

Caspermeyer J (2017) The fruits of life: rose family study leads to new understanding of fruit diversity across geological eras and climates. Molecular Biology and Evolution 34: 505-506

2016

Huang CH, Zhang C, Liu M, Hu Y, Gao T, Qi J*, and Ma H*. 2016. Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics. Molecular Biology and Evolution 33: 2820-2835. [SCI]

Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, and Ma H*. 2016. Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Molecular Biology and Evolution 33: 394-412. [SCI]

张哲, 黄建勋, 戚继*. 基于低拷贝核基因的组分特征研究十字花科植物的系统发生关系. 生物技术通报, 2016, 32(12): 86-95.